About

Education

National Taiwan University
Master of Science in Biomedical Electronics and Bioinformatics
 Sep. 2016 ~ Jul. 2018
University of Illinois at Urbana-Champaign
Exchange Program in Electrical and Electronics Engineering
Project: Finger Mouse
Aug. 2015 ~ Dec. 2015
National Chiao Tung University
Bachelor of Science in Electrical and Computer Engineering
Project: Intelligent Data-Mining Engine for Embedded Skeleton Point Features
Sep. 2012 ~ Jun. 2016

Experience

Jan. 2022 ~ Present

Software Engineer

Feb. 2019 ~ Jan. 2022

Machine Learning Engineer

  • pubmedKB: A novel literature search engine optimized to extract semantic relations between entities in the PubMed abstracts.
  • variant2literature: A full text literature search engine for genetic variants.
  • TAIGenomics: An AI-assisted genomic analysis platform to speed up diagnosis and reporting.
  • DockCoV2: A drug database for Anti-SARS-CoV2.
Aug. 2018 ~ Feb. 2019

Research Assistant

Graduate Institute of Biomedical Electornics and Bioinformatics, NTU

  • NTU Medical Genie: AI decision support system for precision medicine
  • Assay of mixtures of minor contributors’ degraded DNA and major contributors’ nondegraded DNA using massive parallel sequencing and data analysis using deep learning models of artificial intelligence for individual identification.
Sep. 2016 ~ Aug. 2018

Software Engineer

National Taiwan University Hospital Information Technology Office

  • Fast diagnosis of next generation sequencing on newborns and preschoolers
Jan. 2014 ~ Jan. 2018

Full-Stack Engineer

Realyar Technology Company

  • Tourism Bureau M.O.T.C., Republic of China (Taiwan) statistic database system and web application.
  • Kose Junkisei Prime product website.
Nov. 2012 ~ May. 2016

Chief Arbiter, System Engineer, Taskmaster

Aug. 2013 ~ Sep. 2013

Intern

Innovative DigiTech-Enabled Applications & Services Institute of Institute for Information Industry

Publication and Conference (Google Scholar)

  1. PH Li, TF Chen, JY Yu, SH Shih, CH Su, YH Lin, HK Tsai, HF Juan, CY Chen, JH Huan, "pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature" in Nucleic Acids Research, 2022
  2. KH Lee, YC Chang, TF Chen, HF Juan, HK Tsai, CY Chen, "Connecting MHC-I-binding motifs with HLA alleles via deep learning" in Communications Biology, 2021
  3. TF Chen†, YC Chang†, Y Hsiao†, KH Lee†, YC Hsiao, YH Lin, YC Ethan Tu, HC Huang, CY Chen, HF Juan, "DockCoV2: a drug database against SARS-CoV-2" in Nucleic Acids Research, 2020
  4. YC Chang†, YA Tung†, KH Lee†, TF Chen†, YC Hsiao, HC Chang, TT Hsieh, CH Su, SS Wang, JY Yu, SS Shih, YH Lin, YH Lin, YC Ethan Tu, CW Tung, CY Chen, "Potential Therapeutic Agents for COVID-19 Based on the Analysis of Protease and RNA Polymerase Docking" in Preprints, 2020
  5. ET Wu, WL Hwu, YH Chien, C Hsu, TF Chen, NQ Chen, HC Chou, PN Tsao, PC Fan, IJ Tsai, SP Lin, WS Hsieh, TM Chang, CN Chen, CH Lee, YY Chou, PC Chiu, WH Tsai, HC Hsiung, FP Lai, NC Lee, "Critical Trio Exome Benefits In-Time Decision-Making for Pediatric Patients With Severe Illnesses" in Pediatric Critical Care Medicine, 2019
  6. YH Lin, YC Lu, TF Chen, JS Hsu, KH Lee, YW Cheng, YC Chen, JS Fan, CT Tu, CM Hsu, CC Chou, PL Chen, YC Ethan Tu, and CY Chen, "variant2literature: full text literature search for genetic variants" in bioRxiv, 2019
  7. YC Chang, TF Chen, YH Chang, ST Huang, CC Ying, FP Lai, "Web Service of Relevance Comparison of Chinese Medical Regulations based on Natural Language Processing" in E-case & E-Tech, Osaka, Japan, April 1-3, 2018
  8. TF Chen, C Hsu, HC Hsiung, KY Tai, NC Lee, YH Chien, WL Hwu, FP Lai, "Using MViewer and Text Mining to Facilitate Variant Interpretation in Exome Data" in Annual Clinical Genetics Meeting, Charlotte, NC, USA, April 10-14, 2018

Leadership

Dec. 2016 ~ Jan. 2018

President

Student Association of NTU Biomedical Electronics and Bioinformatics Graduate Institute

May. 2014 ~ May. 2015

Vice President, President

Volleyball Team of NCTU Electrical and Computer Engineering Department

Sep. 2015 ~ Mar. 2016

Consultative Committee Member

Bing-Shen Meichu Consultative Committee

Sep. 2013 ~ Mar. 2015

Secretary in Execution Department, President of Propaganda Department

Jia-Wu Meichu Preparatory Committee, Yi-Wei Meichu Preparatory Committee

Honors & Awards

2015 Area Awards of Senior Design Laboratory
ECE445, University of Illinois at Urbana-Champaign
2013 Academic Award, Scholarship National Chiao Tung University